Culture media composition notes Back to culture introductionHome

This summary of compositions has been prepare to facilitate comparison between some of the (sometimes quite bizarre) culture media developed for Trypanosoma brucei. Although it has been quite painstaking to prepare this, it could conceivably contain some errors.

Some components and concentrations in the final calculated formulations may seem strange. This is largely due to several of these media being made, at least originally, but not in current commercial formulae custom made for us by JRH biosciences, by mixing better known tissue culture media in various proportions. These mixtures were then supplemented with trypanosome-specific nutritional requirements or inspired guesses (especially in the case of the original, and so-far only truly defined medium, HX25M) about what they might require. The origin of some supplements is described in more detail in the commentary document.

Some other features are worthy of comment. For example, no purpose is achieved by adding cysteine to media in the absence of bathocuproine, and trypanosomes, like other protozoa, cannot synthesize purines de novo.

Our JRH custom Cunningham's formulation has removed some very probably unnecessary components. The manufacturer may also have changed some salts from H20 or HCl salts to anhydrous, etc, for milling purposes. It is also possible that there might be slight inaccuracies in some formulations due to salts or free amino acids, etc, not being properly specified. Several formula originally included both L-and D-amino acids. Only the L-form is normally used today, and the concentration given is for the amount of L-form.

Does anyone have any idea why taurine is included in some media? Is it a primitive buffer? What does beta-alanine provide in Cunningham's medium? I am sure neither is necessary.

We removed sodium bicarbonate from our formulation of SDM-79 because we don't generally use a CO2 incubator for procyclic forms and we find that the buffering afforded by HEPES and MOPS together keeps the pH from changing at all (at least in large-volume cultures in conical flasks in an orbital incubator). The presence of 5% CO2, however (see culture introduction page), may help cultures grow at low density, even if only by reducing the O2 concentration in the gas phase. I don't think anyone ever studied this systematically, but O2 concentration is critical in malaria culture. Does anyone out there remember candle jars?

Components * (mg/l rounded values) HMI-9 ** MEM ***
GIBCO
Duszenko
MEM-based ****
HX25M SDM79
Original
SDM79
JRH 57453
Cunningham
Original
Cunningham
JRH 67438
DTM *****
Salts, etc CaCl2 165 200 200 176 180 41 113 113 200
  Fe(NO3)3.9H2O
    2.6 0.14 0.15      
  KCl 330 400 400 700 360 346 2,980 3,000 400
  KH2PO4
    900  
     
  KNO3 0.076        
     
  MgSO4 98 98 98 180   84   1,800  
  MgSO4.7H2O
    176 180
3,700   200
  MgCl2.6H2O
       
3,040    
  NaCl 4,500 6,800 6,800 6,980 6,120 5,880     6,800
  NaHCO3 3,020 2,200 2,200 2,740 3,980
    2,200
  NaH2PO4.H2O 125 140 140 123 126 954 530 530 140
  Na2SeO3.5H2O 0.017        
     
  Glucose 4,500 1,000 5,400 4,500 1,900 1,870 700 700  
  Glucosamine.HCl
    73 50 50      
  Glycerol
       
    760
  Fructose
       
400 400  
  Sucrose
       
400 400  
  D-ribose
    0.44 0.10 0.10      
  deoxy-D-ribose
    0.44 0.10 0.10      
  Phenol Red 15 10 10 23 11 11 20 21 10
  HEPES 5,960     19,000 8,000 8,000   6,000 7,940
  MOPS
      5,000 5,000      
   
       
     
  EDTA disodium
    80  
     
  Mercaptoethanol 15        
    15
  Bathocuproine disulfonate.Na2 28   5.7    
    28.2 ****
  Hemin
    10.0 7.5
    7.5
Top of page   HMI-9
MEM
GIBCO
Duszenko
MEM-based
HX25M
SDM79
Original
SDM79
JRH
Cunningham
Original
Cunningham
JRH
DTM
L-amino acids Alanine 25 9 9 182 210 210 550 550 9
  Beta alanine
       
2,000 2,000  
  Arginine.HCl 84 105 105 462 215 248 440 440 126
  Asparagine 25 13 13 100 8 9 240 240 15
  Aspartic acid 30     426 14 14 110 110 14
  Cysteine 182   40 100 0.02 0.02 80   182 ****
  Cystine 91 31 31 58 29 36 30 110 24
  Glutamic acid 75 75 75 290 24 22 250 250 250
  Glutamine 584   292 188 320 513 1,640 1,700 1,640
  Glycine 30 50 50 144 15 15 120 120 8
  Histidine.HCl.H2O 42 42 42 178 38 49 160 160 42
  Hydroxyproline
    9 2 2      
  Isoleucine 105 52 52 318 46 59 45 90 52
  Leucine 105 52 52 513 54 68 90 90 52
  Lysine.HCl 146 58 58 422 72 91 150 187 73
  Methionine 30 15 15 113 85 89 100 100 15
  Phenylalanine 66 32 32 272 111 119 200 200 32
  Proline 40 12 12 228 615 615 6,900 6,900 655
  Serine 42 11 11 182 71 10 100 100 11
  Taurine *****
      160 160 270 270  
  Threonine 95 48 48 386 394 407 50 50 48
  Tryptophan 16 10 10 99 10 13 100 100 10
  Tyrosine 104 52 52 155 150 160 200 200 36
  Valine 94 46 46 382 42 54 105 100 46
   
       
     
Vitamins, etc p-aminobenzoic acid
    0.044 2.01 2.01      
  Ascorbic acid
    0.044 0.010 0.010      
  DL-alpha-tocopherol-Na2PO4
    4.00 0.0020 0.0020      
  DL-alpha-lipoic acid
    0.40  
     
  B12 0.013     1.0  
     
  Biotin 0.013 0.10 0.10 1.00 0.20 0.202 0.20   1.0
  D-Ca pantothenate 4.0 1.0 1.0 1.00 0.70 0.66 0.20   1.0
  Choline chloride 4.0 1.0 1.0 1.44 0.80 0.76 0.20   1.0
  Coenzyme Q6
    0.40  
     
  Coenzyme Q10
    0.40  
     
  Calciferol
    0.088 0.020 0.020      
  Folic Acid 4.0 1.0 1.0 10.0 4.7 4.66 0.20   1.0
  i-Inositol 7.2 2.0 2.0 2.04 1.41 1.33 0.40   2.0
  L-glutathione (reduced)
    0.044 0.010 0.010      
  Menadione
    0.41 0.0020 0.0020      
  Niacin
    0.022 0.0050 0.0050      
  Niacinamide 4.0 1.0 1.0 0.022 0.705 0.67      
  Nicotinamide
    1.0  
0.20   1.0
  Pyridoxal.HCl 4.0 1.0 1.0 1.022 0.705 0.66 0.20   1.0
  Pyridoxine.HCl
    0.022 0.0050 0.0050      
  Riboflavin 0.40 0.10 0.10 0.109 0.072 0.062 0.020   0.10
  Thiamine.HCl 4.0 1.0 1.0 1.00 0.702 0.66 0.20   1.00
  Trans retinoic acid
    0.40  
     
  Vitamin A acetate       0.12 0.028 0.028      
Top of page   HMI-9
MEM
GIBCO
Duszenko
MEM-based
HX25M
SDM79
Original
SDM79
JRH
Cunningham
Original
Cunningham
JRH
DTM
Organic acids acetate.Na
    584 10 10      
  alpha-ketoglutarate
       
370    
  L-malic acid
       
670    
  Citrate.Na3.2H2O
    600  
     
  Fumaric acid
       
55    
  Pyruvate.Na 114   220   100 100   100 114
  Succinic acid
    270  
60    
  Myristic acid
  1.0    
     
   
       
     
Purines, etc Adenine SO4. 2H2O
    8.8 2.0 2.23      
  Adenosine
    20.0 10.0 10.0      
  AMP.H2O
    0.18 0.04 0.04      
  ATP.Na2.3H2O
    0.88 0.20 0.22      
  Cytidine
    20.0  
     
  Guanine.HCl.2H2O
    0.26 0.06 0.06      
  Guanosine
    20.0 10.0 10.0      
  Hypoxanthine 136   13.6 0.26 0.06 0.07   116 14.0
  Thymine
    0.26 0.06 0.06      
  Thymidine (deoxy) **   3.9    
     
  Uracil 10
    0.26 0.06 0.06      
  Cytosine 10                
  Uridine
    20  
     
  Xanthine.Na
    0.26 0.06 0.07      
   
       
     
Lipids & serum Cholesterol
    0.18 0.04 0.04      
  Tween 80
    17.6 4.00 4.06      
  Tween 40 (palmitate)
    5.0  
     
  Linoleic acid
    8.0  
     
  Defatted BSA
    300  
     
  Serum 10%   15%   10% 10% 20% 20% 15%
  Serum Plus™ 10%        
     
Top of page   HMI-9
MEM
GIBCO
Duszenko
MEM-based
HX25M
SDM79
Original
SDM79
JRH
Cunningham
Original
Cunningham
JRH
DTM

* Compositions might vary slightly as some formulations do not specify the salt or degree of hydration.

** HMI-9 is based on IMDM (GIBCO catalogue number 12440). Since January 2007 we routinely omitted Thymidine (previously 39 mg/liter: 0.16 mM). Since August 2009, we routinely added 10 mg/liter each of Uracil and Cytosine because we are using some variants that cannot make pyrimidines. We took out the thymidine because (a) pyrimidines are not required for tryp growth in culture (but low serum concentrations might reduce growth in mice) (b) its omission makes the cells more sensitive to GCV, with which T competes (c) the amount in HMI-9 seems unnecessarily high, although T.brucei does not have a thymidine transporter (mea culpa, the amount of uracil and cytosine are possibly also unnecessarily high as they are actively imported, and cytosine is probably redundant) and other widely used media for Tb culture do not contain it. My enquiries, especially among trypanosome people working on purine and pyrimidine metabolism, have failed to identify why Hirumi originally included it and have not identified any reason to include it (for information on pyrimidine uptake see Gudin S, Quashie NB, Candlish D, Al-Salabi MI, Jarvis SM, Ranford-Cartwright LC & de Koning HP (2006) Trypanosoma brucei: a survey of pyrimidine transport activities. Exp Parasitol 114:118-25. DOI PMID).

*** MEM is GIBCO MEM with non-essential amino acids catalogue number 10370021. There are some variations (enhancements) of MEM in the catalogue.

**** Duszenko's medium for BF is as published in 1990 (MBP 40, 13-22) with modifications in 1995 (MBP 70, 157-166). The inclusion of myristic acid is probably not essential as it is not in other media. When supplemented with proline (600 mg/l), hemin ( 7.5 mg/l), citrate (882 mg/l) and cis-aconitate (522 mg/l) it was used to differentiate BF to PF, which could be maintained in the same medium but without citrate, cis-aconitate, cysteine, bathocuproine, or supplemental (to MEM) glucose, and with 10% serum. In principal using almost the same medium for BF and PF should simplify laboratory management, but I do not know if MEM gives the same high yield of PF as do Cunningham's and SDM-79.

**** The original DTM was further modified (to the composition shown here) by adding glycerol (in place of glucose), heme, 15% fetal bovine serum, 0.2 mM 2–mercaptoethanol, and extra proline, glutamate, glutamine. There is an error in the published (Ziegelbauer K, Quinten M, Schwarz H, Pearson TW, Overath P. Synchronous differentiation of Trypanosoma brucei from bloodstream to procyclic forms in vitro. Eur J Biochem 1990;192:373-8) formulation: glycine is stated where glycerol was intended. Vassella and Boshart further modified DTM by adding 28.2 mg/l bathocuproine and 182 mg/l cysteine (Vassella E, Boshart M. High molecular mass agarose matrix supports growth of bloodstream forms of pleomorphic Trypanosoma brucei strains in axenic culture. Mol Biochem Parasitol 1996;82:91-105). You might want to consider doing this and adding the same two ingredients to SDM79, or any other medium you use.

***** Some people have asked if I know why Taurine is present (and at high concentration) in SDM79 and Cunningham’s medium. I have no idea, but I am sure it is unnecessary. Taurine, in which the sulfur is oxidized, can be a product of cysteine degradation but does not seem to be a useful source of anything.

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